beacon-v2 GenomicVariantFields [ ↗ ]

{S}[B] Status [i]
proposed
Provenance
Used by
Contributors
Source (2.0.0-draft.3)

Attributes

Type: object
Description: All the required fields to query any kind of variant (e.g. SNP, DUP, etc.).

Properties

PropertyType
alternateBasesAlternateBases.yaml#/ [HTML]
assemblyIdAssembly.yaml#/ [HTML]
endarray of "integer"
idstring
mateNameChromosome.yaml#/ [HTML]
referenceBasesReferenceBases.yaml#/ [HTML]
referenceNameChromosome.yaml#/ [HTML]
startarray of "integer"
variantTypestring

alternateBases

assemblyId

end

Precise or bracketing the end of the variants of interest:

id

Id of the variant to display.

mateName

referenceBases

referenceName

start

Precise or fuzzy start coordinate position(s), allele locus (0-based, inclusive).

variantType

The variantType is used to query variants which are not defined through a sequenc of one or more bases using the alternateBases parameter. Examples here are e.g. structural variants: