Cohort sb-phenopackets

{S}[B] Status [i]
implemented
Provenance
Used by
Contributors
Source (v1.0.0)

Attributes

Type: object
Description: A group of individuals related in some phenotypic or genotypic aspect

Properties

Property Type
description string
htsFiles array of "https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/HtsFile.json [SRC] [HTML]"
id string
members array of "https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/Phenopacket.json [SRC] [HTML]"
metaData https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/MetaData.json [SRC] [HTML]

description

description about the cohort

description Value Example
"this is a description about the cohort"

htsFiles

Pointer to the relevant HTS file(s) for the cohort

htsFiles Value Example
{
   "htsFormat" : "GVCF",
   "uri" : "file://data/genomes/file1.vcf.gz"
}

id

An identifier specific to the cohort

id Value Example
"cohort-id-123"

members

add description

members Value Example
{
   "id" : "phenopacketid-123",
   "metaData" : {
      "created" : "2016-06-29T12:03:03.240Z",
      "updates" : [
         {
            "timestamp" : "2007-12-03T10:15:30.00Z"
         }
      ]
   }
}

metaData

Structured definitions of the resources and ontologies used within the phenopacket. REQUIRED

metaData Value Example
{
   "created" : "2016-06-29T12:03:03.240Z",
   "updates" : [
      {
         "timestamp" : "2007-12-03T10:15:30.00Z"
      }
   ]
}

Cohort Value Example

{
   "id" : "cohort-id-123",
   "metaData" : {
      "created" : "2016-06-29T12:03:03.240Z",
      "updates" : [
         {
            "timestamp" : "2007-12-03T10:15:30.00Z"
         }
      ]
   }
}