Disease sb-phenopackets

{S}[B] Status [i]
implemented
Provenance
Used by
Contributors
Source (v1.0.0)

Attributes

Type: object
Description: Message to indicate a disease (diagnosis) and its recorded onset.

Properties

Property Type
ageOfOnset https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/Age.json [SRC] [HTML]
ageRangeOfOnset https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/AgeRange.json [SRC] [HTML]
classOfOnset https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/OntologyClass.json [SRC] [HTML]
diseaseStage array of "https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/OntologyClass.json [SRC] [HTML]"
term https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/OntologyClass.json [SRC] [HTML]
tnmFinding array of "https://schemablocks.org/schemas/sb-phenopackets/v1.0.0/OntologyClass.json [SRC] [HTML]"

ageOfOnset

The onset of the disease. The values of this will come from the HPO onset hierarchy i.e. subclasses of HP:0003674 FHIR mapping: Condition.onset

ageOfOnset Value Example
{
   "age" : "P35Y"
}

ageRangeOfOnset

The onset of the disease. The values of this will come from the HPO onset hierarchy i.e. subclasses of HP:0003674 FHIR mapping: Condition.onset

ageRangeOfOnset Value Example
{
   "start" : {
      "age" : "P35Y"
   }
}

classOfOnset

The onset of the disease. The values of this will come from the HPO onset hierarchy i.e. subclasses of HP:0003674 FHIR mapping: Condition.onset

classOfOnset Value Example
{
   "id" : "HP:0003596",
   "label" : "Middle age onset"
}

diseaseStage

Disease staging, the extent to which a disease has developed. For cancers, see https://www.cancer.gov/about-cancer/diagnosis-staging/staging Valid values include child terms of NCIT:C28108 (Disease Stage Qualifier)

diseaseStage Value Example
[
   {
      "id" : "NCIT:C90529",
      "label" : "AJCC v6 Stage"
   }
]

term

The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)

term Value Example
{
   "id" : "MONDO:0007043"
}

tnmFinding

Cancer findings in the TNM system that is relevant to the diagnosis of cancer. See https://www.cancer.gov/about-cancer/diagnosis-staging/staging Valid values include child terms of NCIT:C48232 (Cancer TNM Finding)

tnmFinding Value Example
[
   {
      "id" : "NCIT:C48232",
      "label" : "Cancer TNM Finding"
   }
]

Disease Value Example

{
   "classOfOnset" : {
      "id" : "HP:0003596",
      "label" : "Middle age onset"
   },
   "term" : {
      "id" : "MONDO:0007043",
      "label" : "Pfeiffer syndrome"
   }
}