This page lists (some of the) schemas and schema components from within the GA4GH ecosystem according to their status levels. Emphasis here is to be "instructive" without claims to represent the current or detailed status - please follow the links to the original projects for details.
The Data Use Limitation is a component of the GA4GH DUO standard and used to describe limitations in the ways data items can be re-used.Continue reading
The Data Use Modifier is a component of the GA4GH DUO standard and used as optional refinement of the limitations defined in DataUseLimitation.Continue reading
Checksum standard provides a simple schema for defining a checksum value
together with a default type.
OntologyClass is an essential core core elementin GA4GH schemas.
It essentially defines the standard way to terms or classes
id - which should be a CURIE - and optionally a
for informative purposes.
ChromosomeLocation is a schema used to represent a single or a range of
A CURIE is a W3C Compact URI formatted string.
It has the structure
reference, as defined by the W3C syntax.
FilteringTerm is a core concept of the Beacon information exchange concepts.
Since Beacon v2
FilteringTerm objects can be a part of Beacon requests and allow
the limitation of Beacon responses through the application of biological or
technical parameters. Additionally, the
/filtering_terms endpoint allows Beacon
resources to expose parameters of their data entities.
The age of a subject (e.g. of a patient at the time of diagnosis) can be described using the ISO8601 "duration" concept.Continue reading
The karyotypic sex is a widely used concept in medical genetics, referring to the composition of the sex chromosomes in the germline of an individual, irrespective of their phenotypic sex or gender.Continue reading
GeoLocation object is a geographic location formatted as a
GeoJSON feature. The format is compatible with RFC 7946, while currently
limiting its scope to features of type "Point". Also, the schema defines some
optional parameters compatible with the GeoJSON feature properties wrapper